Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015885350.1_cds_XP_016439329.1_34894
CDS Infomation

[gene=LOC107765218] [db_xref=GeneID:107765218] [protein=squamosa promoter-binding-like protein 1] [protein_id=XP_016439329.1] [location=complement(join(43113..43568,43807..44430,44963..45113,45244..45385,45484..45601,45977..46084,46186..46260,47134..47526,47596..47756,50753..50934,51583..52175))] [gbkey=CDS]
Sequence

ATGGATGCTCACAATTATCATGGTTCAGTTAGTGGAAAAAAGAGTATGGAGTGGGCTTCG
AATGATTGGAAATGGGATGGTGATTTATTTACAGCGGCGCGGCGGAATAATAATTCACTG
CCATCAGATTGTTGTAAGAGCAAACAGTTAATGTTTCCTATAGGATCAGAGATTCATCCA
GAAGCTAGTAGAATCTCCAATTGTTTTTCATCTGGTTCAGATGAATTACTGACATTAGGA
AGTAATGATAAAGGGAGGAAAGAATTGGAGAAAAGGAGGCGGGCGATCGTCATTGAAGAT
GATGAACTGGATCATGAAGAAGAAGCTGGATCACTTAATTTGAAGCTAGGTGGTCAATTG
TATCCTGTGATGGAAGGGGATGAGGAAAAACTGGAAGGGAAGAGTGGTAAGAAGACGAAA
ATTGTTGGGGTTTCGTCGAATCGTGCAGTTTGTTGTCAAGTGCAGGATTGTCGAGCTGAT
TTGAGCAATGCTAAAGATTACCATCGGCGACATAAAGTGTGTGATGTGCATTCTAAAGCT
GCTAAAGCTTTGGTGGGCAATGTTATGCAGCGATTTTGTCAGCAGTGCAGTAGGTTTCAT
GTTCTACAAGAGTTTGATGAGGGGAAGCGGAGCTGTCGTAGGCGGTTAGCAGGTCATAAC
AGGCGAAGAAGAAAAACACATCCAGAAAATGTAGCTAATGGAGCCTCCATGAATGATGAG
GGGGGTATTAACTACTTATTAATTAGTCTGCTGAGGATACTGACCAACGTACAATCCAAT
AGCTCAGATCAAACTAAAGACCAGGATCTACTGTCCCATCTGATGAGAAACCTAGCTAGT
TTGGCTGGTGCAACTAATGAGAGGAATACGTCGGGCTTGTTGTCTGCGCCTCCAGAGCAG
TGGAATGCAGGGACATCTATGGGGGCTTCAAAAGAGGATTCTCTTAAGCCTACTGGGAAT
TGTTTGATACCTGCATCTGAAGTGACAGAGAAGAGAATGGGCAGGAGTGATGTTGAATAT
GGGATCTCACAAAATCCTTGTGCTTGGCAGCCTGATTCTCTTTGTTGCAGAAAAGAGAGC
TCACCTATCAATGCAAATGCCTCAGCTAAGGTGAAGCTGAATAATATCGATTTGAATAAC
ATCTATGATGATTCTCAAGATGGCAATCAAAAGCTGCAGAATTCTGATGCCTCTGCAAAC
CCAGGGGCTGCATCTTCTGGCTGTCCTCTATGGATATGTCATGACCCTCATAAGCCAAGC
CCAGGGACAAGTGGGAATTCGGGATCTACCTCATCCCTTTCACTATCTAATTCCAGTGGA
GAGGCTCAGAGTCGAACAGATCGTATAGTCTTTAAACTCTTTGGGAAAGATCCTGGTGAT
TTTCCTACAGCCTTGCGGAAACAGATTCTTGATTGGTTATCACACAGTCCTACAGATATT
GAAAGCTACATTAAGCCTGGTTGTATTATACTAACAATATATCTTCGGATGGATAAATCC
ATATGGGAGGAGCTTTATTGTGATCTTAATTCTAGTTTGAGGAAGCTTCTTAATGCATCC
GCGGATTCCTTTTGGCAAACTGGATGGGTTTATGCTAGGGTGAATGATCGAGTGGCATTT
TTGTTTAATGGGCAGGTTGTTCTGGACACTTCCTTACCAGTTAAAAGCCATAGGAGCTGT
GGGATATCAATTGTCAAACCTATTGCAGTTTGTGCCTCCGAAAGAGTTCAGTTTTTGGTG
AAAGGCGTTAACCTATCCCGGCCCACTACAAGGTTACTATGTGCCCTGGATGGGAATTAC
CTGGTCCAGGGTAACTGTATTGATATGATGGTAGGAGCTGATTCTTGTATGGGCCATGAA
GACATCCAGTCCCTTAGCTTTCCTTGTATTCTGCCAAATGTTACTGGCAGAGGGTTCATT
GAGGTTGAAGACCATGGCCTTAGTAGCAACTTTTTCCCATTTATAGTTGCAGAGAAAGAT
GTTTGCTCTGAGATTCGTACATTGGAGAGCAATATTGAGGTTGCTGAAATGGCTGGTGGT
TTTCTCCAAGGAACTGAAAACTTGCAAGCCAGGGACCAAGCTCTGGAATTTTTACATGAA
ATGGGTTGGCTGCTTCATAGAAGTCATTTGAAATTTAGAGTGGGTTCTGGTGTCAACTTG
AATCTCTTCCCTTTTCAGCGATTCAAGTGGCTTATAGAATTCTCCATTGACCAAGATTGG
TGTGCTGTCGTAAAGAAACTGTTGGATGTTTTCTTCAATGGCATTGTAGATGTAGGACAA
CAGTCATCACTTGACATTCCCTTGTGGGAGGTTGGCATCCTTCATCAAGCCGTGAGGAGA
AAGTGCAGATCCATGGTAGAAGTCCTATTGAAATACCGTCCGCATGGAGCTTTTGACAAA
TCAGGACCACAAAAGCAACAAGATGATCGTGACTATTTATTTAGACCTGATGCAGTGGGT
CCTGGGGGTTTGACTCCACTTCATCTTGTTGCTAGTCTTTCTGGCTTTGAGAATATTTTG
GATGCATTAATTGATGATCCAGGACAGGTGGGAATTGAAGCCTGGAAAAGTGCCTGTGAC
AGTACCGGACTGACACCTAATGATTATGCATGCTTGCGAGGCCATTACTCGTATATTCAT
ATTGTGCAAAAGAAAATCAGTCAGAAACGAGGTGATGGGCATGTTCTCGATATCCCTGGT
TCGTTGTTGGATAGCAGTATCAAGCAGAAACTATCCGATGATCATAGGTCTGTTAAAGTT
GCTAGCTTACAAACTGAGAAGTCTTTAAGGAAACCAATTCAAACACATTGCAGACAGTGC
GACCAGAAACTCTATTATGGAAACTCGGGATCATCACTTGCAATATACAAACCGGCAATG
CTTTCAATGGTTGCAATTGCTGCCATCTGCGTTTGTGTAGCTTTGCTGTTCAAAAGCTCA
CCAGAGGTTCTTTACTCGTTCAGACCGTTCAGGTGGGAGCTGCTGAAGTATGGCTCCATC
TAA

Peptide Sequence

PEP ID

XP_016439329.1
PEP Infomation

PREDICTED: squamosa promoter-binding-like protein 1 [Nicotiana tabacum]
Sequence

MDAHNYHGSVSGKKSMEWASNDWKWDGDLFTAARRNNNSLPSDCCKSKQLMFPIGSEIHP
EASRISNCFSSGSDELLTLGSNDKGRKELEKRRRAIVIEDDELDHEEEAGSLNLKLGGQL
YPVMEGDEEKLEGKSGKKTKIVGVSSNRAVCCQVQDCRADLSNAKDYHRRHKVCDVHSKA
AKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHPENVANGASMNDE
GGINYLLISLLRILTNVQSNSSDQTKDQDLLSHLMRNLASLAGATNERNTSGLLSAPPEQ
WNAGTSMGASKEDSLKPTGNCLIPASEVTEKRMGRSDVEYGISQNPCAWQPDSLCCRKES
SPINANASAKVKLNNIDLNNIYDDSQDGNQKLQNSDASANPGAASSGCPLWICHDPHKPS
PGTSGNSGSTSSLSLSNSSGEAQSRTDRIVFKLFGKDPGDFPTALRKQILDWLSHSPTDI
ESYIKPGCIILTIYLRMDKSIWEELYCDLNSSLRKLLNASADSFWQTGWVYARVNDRVAF
LFNGQVVLDTSLPVKSHRSCGISIVKPIAVCASERVQFLVKGVNLSRPTTRLLCALDGNY
LVQGNCIDMMVGADSCMGHEDIQSLSFPCILPNVTGRGFIEVEDHGLSSNFFPFIVAEKD
VCSEIRTLESNIEVAEMAGGFLQGTENLQARDQALEFLHEMGWLLHRSHLKFRVGSGVNL
NLFPFQRFKWLIEFSIDQDWCAVVKKLLDVFFNGIVDVGQQSSLDIPLWEVGILHQAVRR
KCRSMVEVLLKYRPHGAFDKSGPQKQQDDRDYLFRPDAVGPGGLTPLHLVASLSGFENIL
DALIDDPGQVGIEAWKSACDSTGLTPNDYACLRGHYSYIHIVQKKISQKRGDGHVLDIPG
SLLDSSIKQKLSDDHRSVKVASLQTEKSLRKPIQTHCRQCDQKLYYGNSGSSLAIYKPAM
LSMVAIAAICVCVALLFKSSPEVLYSFRPFRWELLKYGSI

Transcript Sequence

Gene sequence data has not been registered.